Logic Pro Native Master Plugin Resets After Each Save

I have been mixing down my album lately going back to old songs and changing things. Turns out when I bounce it out the master settings are reset to some weird values? It looks normal inside the strip but instead of a 0 DB peak it is -1 DB and the dynamic mix is different as well. I exported the song and wondered why the waveform was super small compared to what it is supposed to be. The master chain ONLY has the Logic Master plugin. Every Logic Pro project file I open that I saved with Logic Master chain has this issue.

To fix this right now all I am doing is taking off the plugin and doing it again, letting it analyze the waveform and hoping I get a similar enough result to last time. It is just annoying to repeat, also because the parameters are "analyzing waveform" sometimes I find it hard to get the same result as I got last time. Wondering if anyone is facing a similar issue.